How we make this list: we compare pricing pages, product documentation and public user reviews. Rankite is independent; if a vendor ever pays for a featured spot, that listing is clearly labeled Partner.
Key takeaways
- Amazon pays you in settlements, not sales: every two weeks a lump sum lands minus fees, refunds, storage and ad costs. The tools on this list exist to turn those settlements into clean books.
- A2X (from $29/month) is the established settlement-reconciliation standard for QuickBooks and Xero users; Link My Books and Taxomate compete on tax mapping and multi-channel coverage.
- Seller Ledger ($10/month, 30-day trial) skips the separate ledger entirely: it is bookkeeping built for sellers, not a connector to accounting software.
- QuickBooks Online ($38/month) and Xero ($27/month) are the ledgers underneath most of these tools, not replacements for them. Budget for both the connector and the ledger.
- Bench ($399/month) is the done-for-you option: a human bookkeeper instead of software you configure. Bookkeep sits between, posting daily sales summaries automatically.
Quick comparison
| Tool | Best for | Starting price | Free plan |
|---|
 A2X | Amazon sellers posting settlements to QuickBooks or Xero | $29/month | Free trial |
 Link My Books | Sellers wanting VAT and sales-tax mapping handled | See website (tiered by order volume) | Free trial |
 Taxomate | Multi-channel sellers wanting COGS and inventory sync | See website (tiered by order volume) | Free trial (14 days) |
 Seller Ledger | Sellers wanting bookkeeping without a separate ledger | $10/month (up to 250 transactions) | Free trial (30 days, no card) |
 QuickBooks Online | Sellers whose accountants live in QuickBooks | $38/month (Simple Start) | Free trial (30 days) |
 Xero | Sellers wanting unlimited users and clean bank feeds | $27/month (Early) | Free trial |
 Bench | Sellers wanting a human bookkeeper to do it all | $399/month (Bookkeeping) | No (demo available) |
 Bookkeep | Sellers and agencies posting daily sales summaries | See website (scales with revenue and connected channels) | Free trial (14 days, no card) |
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We review this list regularly. Vendors can request a listing, send updated pricing or ask about featured placement.
The best bookkeeping software for Amazon sellers
Amazon's payout report is where seller bookkeeping goes to die. Every settlement period, Amazon deposits one net amount that bundles product sales, shipping credits, refunds, referral fees, FBA fees, storage fees, advertising costs and tax collected, across every marketplace you sell in. Recording that deposit as "Amazon income" makes your books wrong in every direction: revenue overstated, fees invisible, inventory unaccounted, tax a guess. The tools below solve this specific problem in two different ways: connectors that translate settlements into proper journal entries in QuickBooks or Xero, and seller-native bookkeeping that replaces the general ledger for the sales side.
Starting price$29/month
Free planFree trial
A2X does one job and has done it longer than anyone: it takes each Amazon settlement and posts a summarized journal to QuickBooks Online, Xero or NetSuite with every fee, refund, tax and adjustment categorized, so the entry matches the payout in your bank feed. Plans start at $29 per month per the vendor, tiered by monthly order volume and channel count, with higher tiers adding COGS tracking, FBA inventory locations and premium onboarding.
The pricing structure deserves a close read. Each sales channel needs its own subscription, and costs rise fast with order volume: moving from a few thousand to tens of thousands of orders per month multiplies the bill. For a single-channel Amazon seller, A2X is the safe default. For sellers on Amazon plus Shopify plus Etsy, price the multi-channel bundle against Link My Books or Taxomate before committing.
What we like- The category standard for Amazon settlement reconciliation, with deep marketplace coverage
- Posts summarized journals that match the bank deposit exactly, making reconciliation one click
- COGS tracking and FBA inventory locations on higher tiers
Watch out for- One subscription per sales channel, so multi-channel sellers pay per channel
- Pricing scales steeply with order volume
Starting priceSee website (tiered by order volume)
Free planFree trial
Link My Books competes with A2X directly and differentiates on tax. The standout is the guided VAT setup: sellers with multiple EU VAT registrations or complex product tax mixes get product grouping and tax rules without manual mapping, and the vendor's support team is staffed by accountants rather than generalists. It connects Amazon, eBay, Etsy, Shopify, Walmart and TikTok Shop to Xero and QuickBooks, imports 90 days of history on trial (up to 24 months on paid plans), and includes a free onboarding call.
Pricing scales with order volume and channel count (one Amazon merchant ID counts as one channel, with all its marketplaces included), and the vendor auto-adjusts your plan from a rolling average rather than billing overages. The free trial is the evaluation: connect your seller account, run one settlement through, and check the tax mapping against your current books.
What we like- Guided tax wizard for VAT across multiple EU registrations
- Unlimited users on every plan, so your accountant works free
- Automatic plan upgrades based on rolling average order volume, no surprise overage bills
Watch out for- Pricing is not published as simple numbers on the pricing page
- UK-based company, so US sellers should confirm support hours fit
#3
Taxomate
Best for: Multi-channel sellers wanting COGS and inventory sync
Visit taxomate.com
Starting priceSee website (tiered by order volume)
Free planFree trial (14 days)
Taxomate covers Amazon, eBay, Shopify, Walmart and Etsy into QuickBooks Online, Xero and Wave, with COGS tracking, one-click auto-sync and unlimited users standard. The differentiator is the QuickBooks inventory sync plan: Amazon, eBay, Shopify and Walmart sales post to QBO as sales invoices that adjust inventory levels, with fee breakdowns per SKU, which suits sellers who run inventory inside QuickBooks rather than a separate system. Every plan includes a 14-day trial, email and chat support, and a 1:1 onboarding call.
Two limits to note. The inventory sync works with QuickBooks Online only (Xero and Wave get summarized COGS invoices instead), and Wave does not support the Shopify channel. Plans are tiered by monthly order volume with automatic upgrades. If inventory-in-QBO is your setup, Taxomate deserves the trial; if not, compare it to A2X and Link My Books on tax mapping alone.
What we like- 14-day free trial on every plan with 1:1 onboarding included
- QuickBooks inventory sync (FBA inventory, fee breakdown per SKU) for sellers who track stock in QBO
- Unlimited marketplaces and historical data on all plans
Watch out for- Dollar pricing is not shown as static numbers on the pricing page
- Inventory sync is QuickBooks-only, not Xero
Starting price$10/month (up to 250 transactions)
Free planFree trial (30 days, no card)
Seller Ledger takes the other architectural path: instead of connecting Amazon to QuickBooks, it is the books. It imports transactions from your sales channels, categorizes them with seller-aware logic, and produces the reports and tax-ready financials a seller needs, with pricing based purely on monthly transaction volume: $10/month up to 250 transactions, $20 to 1,000, $50 to 5,000, and $100 beyond. Every customer gets every feature, and the 30-day trial requires no credit card.
The honest question is your accountant. If your CPA lives in QuickBooks and expects a QBO file at year end, a seller-native ledger adds a translation step. If you are a seller doing your own books or working with an ecommerce-specialist accountant, Seller Ledger removes an entire subscription (no QuickBooks needed) at a fraction of the combined cost. Try the trial through one full settlement cycle before deciding.
What we like- Published, simple pricing ($10 to $100/month by transaction volume) with every feature on every plan
- 30-day free trial with no credit card
- Built for sellers, so Amazon/Etsy/eBay concepts are native, not translated
Watch out for- Newer and narrower than QuickBooks/Xero ecosystems
- Accountants unfamiliar with it may ask you to export to their system anyway
Starting price$38/month (Simple Start)
Free planFree trial (30 days)
QuickBooks Online is the ledger underneath most Amazon seller bookkeeping, not the solution to it. On its own, QBO cannot parse an Amazon settlement; paired with A2X, Link My Books or Taxomate, it becomes the system of record your accountant expects. Pricing runs $38/month (Simple Start, 1 user) to $85 (Essentials, 3 users), $140 (Plus, 5 users, inventory) and $340 (Advanced), with a 30-day trial and frequent new-customer discounts.
Which plan a seller needs depends on inventory. Sellers tracking stock in QBO need Plus for inventory and COGS; sellers using Taxomate's inventory sync or a separate inventory tool can run Simple Start or Essentials. The deciding factor is rarely features: it is whether your accountant works in QuickBooks. If they do, this is the ledger. If they work in Xero, do not fight it.
What we like- The US accountant standard, so finding a bookkeeper who knows it is trivial
- Plus plan ($140/month) adds inventory tracking and project profitability
- 750-plus app integrations including every tool on this list
Watch out for- Amazon settlements need a connector (A2X, Link My Books, Taxomate) to be accurate
- Per-plan user limits where Xero includes unlimited users
#6
Xero
Best for: Sellers wanting unlimited users and clean bank feeds
Visit xero.com
Starting price$27/month (Early)
Free planFree trial
Xero is the other ledger option, and its pitch to sellers is arithmetic: unlimited users on every plan means the seller, the bookkeeper and the VA all work in the same file for one subscription. US pricing is $27/month (Early), $59 (Growing) and $97 (Established) following the October 2026 increase. Like QuickBooks, Xero needs a settlement connector for Amazon accuracy; A2X, Link My Books and Taxomate all integrate with it.
The Early plan's caps (20 invoices, 5 bills monthly) push most active sellers to Growing at $59. Compare that against QuickBooks Simple Start at $38 with one user: a seller with two staff members in the books pays $38 plus user constraints on QBO versus $59 flat on Xero. The reconciliation experience is genuinely better on Xero, which matters when you are matching settlements monthly. Choose by your accountant's preference and your user count, not by list price.
What we like- Unlimited users on every plan, a real saving for sellers with staff or bookkeepers
- Bank reconciliation is the best in the category
- Strong app marketplace with A2X, Link My Books and Taxomate integrations
Watch out for- Early plan caps at 20 invoices and 5 bills per month
- US payroll and some advanced features need paid add-ons
#7
Bench
Best for: Sellers wanting a human bookkeeper to do it all
Visit bench.co
Starting price$399/month (Bookkeeping)
Free planNo (demo available)
Bench is the service, not the software: for $399/month (or $199/month on Bookkeeping Light for businesses under $250K annual revenue, or $649/month with tax filing), a dedicated bookkeeper maintains your books, reconciles accounts monthly and delivers tax-ready financials. For sellers who have tried to do their own books and failed, the value is not the software but the finished books.
Be clear about what it does not do: Bench does not parse Amazon settlements natively the way A2X does. Most seller clients pair Bench with a settlement connector or feed it clean summaries. Price the combination: Bench plus A2X can run $450-plus monthly, which makes sense for six-figure sellers who value their time and nonsensical for a part-time seller. Annual billing saves 20 percent.
What we like- A dedicated human bookkeeper does the work: categorization, reconciliation, month-end close
- Year-end tax-ready financials included on every plan
- Bookkeeping Light at $199/month for businesses under $250K revenue
Watch out for- The most expensive option here by far
- You still need clean Amazon data feeding in, so it pairs with rather than replaces settlement tools
#8
Bookkeep
Best for: Sellers and agencies posting daily sales summaries
Visit bookkeep.com
Starting priceSee website (scales with revenue and connected channels)
Free planFree trial (14 days, no card)
Bookkeep automates the daily close: it pulls sales data from connected channels (Amazon, Shopify, eBay, Square, Stripe and others) and posts summarized journals to QuickBooks or Xero every day, so the books are current without monthly settlement wrangling. Pricing scales with your revenue and number of connected channels, and the system adjusts your plan automatically as those change. The 14-day trial needs no credit card.
The positioning is closer to A2X than to Seller Ledger: Bookkeep is the automation layer between your channels and your ledger, and it is popular with accounting firms managing multiple seller clients (one bill across entities). Solo sellers should compare its daily-posting model against A2X's per-settlement model: daily summaries give fresher books; settlement summaries match Amazon's payout cycle exactly. Either is defensible; pick the rhythm your accountant prefers.
What we like- Posts daily summarized journals automatically to QuickBooks or Xero
- Plans scale with revenue and channel count, with automatic adjustments
- 14-day trial with no credit card and extendable on request
Watch out for- Pricing is not published as fixed numbers
- Accounting-firm-oriented, so solo sellers may find the entity/channel model more complex than needed
Settlement reconciliation is the feature that decides
Every tool here handles settlements differently, and the method matters. A2X, Link My Books and Taxomate post per-settlement journals: one entry per Amazon payout period, with sales, fees, refunds, taxes and adjustments broken out, matched to the bank deposit. Bookkeep posts daily summaries instead: fresher books, but the entries do not map one-to-one to payouts. Seller Ledger and Bench sidestep the question by being (or maintaining) the books themselves.
When you trial a connector, run one full settlement period end to end. Check four things: does the journal total match the bank deposit to the cent; are fees broken out by type (referral, FBA, storage, advertising) rather than lumped; is sales tax or VAT mapped to the right liability accounts; and does COGS post if you track inventory cost. If any of those fail, the tool does not fit your setup no matter how clean the dashboard looks. Also confirm marketplace coverage: all four connectors cover Amazon's major marketplaces, but multi-marketplace sellers should verify each region they sell in.
Do you still need QuickBooks or Xero underneath?
For three of these tools, yes. A2X, Link My Books, Taxomate and Bookkeep are connectors and automation layers: they need a general ledger to post into, which means budgeting for both subscriptions. A typical stack is A2X ($29-plus/month) plus QuickBooks Simple Start ($38/month) or Xero Growing ($59/month): roughly $70 to $120 monthly before volume tiers push the connector price up.
Seller Ledger replaces the ledger for the sales side at $10 to $100/month, which is the cheapest complete answer if your accountant accepts it. Bench replaces your bookkeeping labor at $199 to $649/month, usually on top of a connector. The right architecture depends on who does your taxes: if your CPA demands QuickBooks, the connector-plus-QBO stack is non-negotiable. If you are self-filing or with an ecommerce accountant, Seller Ledger alone can carry a small seller. Do not buy the ledger and the connector from different philosophies; pick the stack your accountant will actually open in April.
How we chose
We started with the searches Amazon sellers run: bookkeeping software for Amazon sellers, Amazon seller accounting software, Amazon FBA bookkeeping and ecommerce accounting software. We kept only tools with real Amazon settlement handling (payout reconciliation, fee breakdowns, marketplace coverage) or seller-native bookkeeping, excluding generic accounting software with no ecommerce depth. For each tool we verified the current vendor site, checked pricing against the vendor's own pricing pages, and compared settlement methods, tax handling and ledger requirements. Where prices were not published as verifiable numbers we wrote "See website".
Frequently asked questions
What is the best bookkeeping software for Amazon sellers?
For most sellers: a settlement connector (A2X, Link My Books or Taxomate) posting into QuickBooks Online or Xero. A2X is the established standard; Link My Books leads on VAT handling; Taxomate adds QuickBooks inventory sync. Sellers wanting one subscription should look at Seller Ledger; sellers wanting it done for them should look at Bench.
How much does bookkeeping software for Amazon sellers cost?
A connector plus ledger stack runs roughly $70 to $120/month at low volume (e.g. A2X from $29 plus QuickBooks at $38 or Xero at $59), rising with order volume. Seller Ledger runs $10 to $100/month all-in. Bench runs $199 to $649/month for done-for-you bookkeeping. All connectors offer free trials.
Can QuickBooks handle Amazon settlements on its own?
No. QuickBooks Online cannot parse Amazon settlement reports into proper fee, refund and tax breakdowns. You need a connector (A2X, Link My Books, Taxomate, Bookkeep) or a seller-native ledger (Seller Ledger). Recording the payout as a single income line makes revenue, fees and tax all wrong.
Do I need inventory tracking in my accounting?
If you want accurate COGS and margins, yes, somewhere. Options: QuickBooks Plus ($140/month) with Taxomate's inventory sync posting into it, A2X's COGS features on higher tiers, or a dedicated inventory tool. Sellers with simple product lines can track COGS in the connector; sellers with hundreds of SKUs usually need inventory in the ledger or a separate system.
What about sales tax for Amazon sellers?
Amazon collects and remits marketplace facilitator tax in most US states, but you still need accurate records of what was collected where, and you may have nexus obligations from inventory in FBA warehouses. Link My Books and Taxomate map tax data into your ledger; none of these tools file returns for you. Confirm your filing obligations with a tax professional.
A2X vs Link My Books vs Taxomate: which should I choose?
A2X is the safest default with the longest track record. Link My Books wins for sellers with VAT complexity or who want accountant-grade support. Taxomate wins for sellers who track inventory inside QuickBooks Online. All three offer free trials; run one settlement period through your top two and compare the journal accuracy.
Sources we checked (8)
- https://www.a2xaccounting.com/amazon/pricing
- https://linkmybooks.com/pricing/
- https://taxomate.com/pricing/
- https://sellerledger.com/pricing/
- https://quickbooks.intuit.com/
- https://www.xero.com/us/
- https://www.bench.co/pricing/
- https://bookkeep.com/pricing/
Is your product missing or out of date?
We review this list regularly. Vendors can request a listing, send updated pricing or ask about featured placement.
Shihab Mia · Founder, Rankite
Shihab has spent more than a decade helping SaaS and e-commerce brands grow through search. He writes Rankite's software buying guides from pricing pages, documentation and public user reviews. More about Shihab.